PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478384
Common NameARALYDRAFT_478384
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 561aa    MW: 63232.9 Da    PI: 4.2515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478384genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98.2e-5391361128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             l+pGfrFhPtdeelv +yLk+k+ +k++++ ++i+ +d+yk+ePwdLp k k+k+++ ewyfFs  dkky++g+++nrat+ gyWk+tgkd+e+l+ ++++vg
  478384   9 LAPGFRFHPTDEELVRYYLKRKICNKPFKF-DAISVTDVYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYRNGSKTNRATEMGYWKTTGKDREILN-GSKVVG 109
             579**************************9.99**************95347777888**************************************.9***** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
             +kktLv++kgrap+ge+t+Wvmheyrl
  478384 110 MKKTLVYHKGRAPRGERTNWVMHEYRL 136
             *************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-617159IPR003441NAC domain
PROSITE profilePS5100557.9289159IPR003441NAC domain
PfamPF023651.4E-2711136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009819Biological Processdrought recovery
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK ICNKPFKFDA ISVTDVYKSE PWDLPDKSKL  60
KSRDLEWYFF SMLDKKYRNG SKTNRATEMG YWKTTGKDRE ILNGSKVVGM KKTLVYHKGR  120
APRGERTNWV MHEYRLVDED LDKTGVHQDA FVLCRIFQKS GSGPKNGEQY GAPFVEEEWE  180
EEDDMTFVPN QEDLGSQDHV YVDMDDIDQK SENFVVYDAI PIPLNFIHGE SSNNVETNYS  240
DSVNYIQPGN YVDSGGYFEQ PEESYEKDQK PIIRDGNLQN DALFQEEEIG CGVQDEHTSN  300
LLSSENIFGT DTSCYNDFPV ESNYLTGEAF LDPNSNLLQN DGLYLETNDL SSTQQDGFDF  360
EDYLTFFDED DESAQNLTFD PSQLMGNEDI FVDQEELFQE VETKELKKEE TSGSKHVVEE  420
KEKDEASCSK QVDADATEFE PDYKYPFLKK ASHMLAAIPA PPAFASELPT KDAAIRLHAA  480
QSSGSVHVTA GMITISDGNM GWSYGKNGNF DLILSLGLVQ GNTASEKSGN SSAWAMLIFM  540
CLWVLVLSVS FKVSILVSSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-45816516171NAC domain-containing protein 19
4dul_A2e-45816516171NAC domain-containing protein 19
1ut7_B2e-45816516171NO APICAL MERISTEM PROTEIN
1ut7_A2e-45816516171NO APICAL MERISTEM PROTEIN
1ut4_B2e-45816516171NO APICAL MERISTEM PROTEIN
1ut4_A2e-45816516171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00343DAPTransfer from AT3G10500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0510030.0AY051003.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds.
GenBankAY0793450.0AY079345.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882677.10.0ANAC053
SwissprotQ949N00.0NAC53_ARATH; NAC domain-containing protein 53
TrEMBLD7L8Z70.0D7L8Z7_ARALL; ANAC053
STRINGfgenesh2_kg.3__1085__AT3G10500.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.10.0NAC domain containing protein 53